Variant report

Variant	rs73449817
Chromosome Location	chr6:74659972-74659973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12530086	0.80[AFR][1000 genomes]
rs2217987	0.80[AFR][1000 genomes]
rs4072647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57228204	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57794710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449808	0.80[AFR][1000 genomes]
rs73449813	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449821	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449840	1.00[EUR][1000 genomes]
rs73449841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv526236	chr6:74563545-74662900	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv34305	chr6:74571797-74675280	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019469	chr6:74644208-74702416	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74658200-74660600	Weak transcription	Spleen	Spleen

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