Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45742110..45743649-chr6:45744659..45746920,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16873787	0.89[AFR][1000 genomes]
rs16873788	0.87[AFR][1000 genomes]
rs16873790	0.92[AFR][1000 genomes]
rs16873791	0.90[AFR][1000 genomes]
rs16873793	0.92[AFR][1000 genomes]
rs16873804	0.92[AFR][1000 genomes]
rs16873805	0.92[AFR][1000 genomes]
rs16873808	0.92[AFR][1000 genomes]
rs16873809	0.92[AFR][1000 genomes]
rs16873810	0.92[AFR][1000 genomes]
rs16873811	0.92[AFR][1000 genomes]
rs57475247	0.85[AFR][1000 genomes]
rs58425603	1.00[AMR][1000 genomes]
rs61102292	0.92[AFR][1000 genomes]
rs62400439	0.92[AFR][1000 genomes]
rs62400440	0.91[AFR][1000 genomes]
rs6458463	0.92[AFR][1000 genomes]
rs6458465	0.92[AFR][1000 genomes]
rs6458466	0.92[AFR][1000 genomes]
rs73450779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744982	0.92[AFR][1000 genomes]
rs7747594	0.92[AFR][1000 genomes]
rs7752476	0.92[AFR][1000 genomes]
rs7752583	0.92[AFR][1000 genomes]
rs7767214	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45739800-45750400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:45741400-45744400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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