Variant report

Variant	rs73454172
Chromosome Location	chr13:38754465-38754466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73454194	1.00[AMR][1000 genomes]
rs73456036	1.00[AMR][1000 genomes]
rs73456089	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38752800-38754600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:38753000-38754600	Enhancers	NHEK	skin
3	chr13:38753000-38755200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:38753200-38755600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:38753600-38754800	Enhancers	HMEC	breast
6	chr13:38753600-38755600	Enhancers	HSMM	muscle
7	chr13:38753800-38754600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:38753800-38755000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:38754000-38755000	Enhancers	Fetal Brain Female	brain
10	chr13:38754200-38754600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:38754400-38754600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:38754400-38754600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:38754400-38754600	Enhancers	Osteobl	bone
14	chr13:38754400-38754800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:38754400-38754800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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