Variant report

Variant	rs73454521
Chromosome Location	chr13:38191463-38191464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73454515	0.93[AFR][1000 genomes]
rs73454519	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv430553	chr13:38184100-38203200	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38189200-38192400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:38189400-38191600	Enhancers	HSMM	muscle
3	chr13:38189400-38191600	Enhancers	Osteobl	bone
4	chr13:38189400-38192800	Enhancers	NH-A	brain
5	chr13:38189600-38193000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:38189800-38193200	Enhancers	NHDF-Ad	bronchial
7	chr13:38190200-38192000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:38190200-38192200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:38190400-38193200	Enhancers	Hela-S3	cervix
10	chr13:38190600-38191600	Weak transcription	Fetal Heart	heart
11	chr13:38190600-38191600	Weak transcription	A549	lung
12	chr13:38190600-38193000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:38190800-38191600	Enhancers	NHEK	skin
14	chr13:38190800-38191800	Enhancers	Placenta	Placenta
15	chr13:38190800-38192000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:38190800-38192800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:38190800-38193600	Enhancers	HSMMtube	muscle
18	chr13:38190800-38193600	Enhancers	NHLF	lung
19	chr13:38191000-38191600	Enhancers	Ovary	ovary
20	chr13:38191000-38191800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr13:38191000-38191800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:38191000-38191800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:38191000-38191800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:38191000-38192400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr13:38191000-38192600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr13:38191000-38193000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:38191000-38193000	Enhancers	HUVEC	blood vessel
28	chr13:38191000-38193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:38191200-38191800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr13:38191200-38191800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:38191200-38193200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:38191400-38191600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr13:38191400-38191800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr13:38191400-38191800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr13:38191400-38191800	Enhancers	Adipose Nuclei	Adipose
36	chr13:38191400-38191800	Enhancers	Fetal Lung	lung
37	chr13:38191400-38191800	Enhancers	HMEC	breast
38	chr13:38191400-38192800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:38191400-38193200	Enhancers	Rectal Smooth Muscle	rectum
40	chr13:38191400-38193400	Enhancers	Muscle Satellite Cultured Cells	--

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