Variant report

Variant	rs73454729
Chromosome Location	chr6:73845750-73845751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73329575..73331858-chr6:73843020..73845929,2	K562	blood:
2	chr6:73843144..73846090-chr6:73848309..73850546,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-257K9.7.1-1	chr6:73845290-73845882	ENSG00000229154.1

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73452886	1.00[AMR][1000 genomes]
rs73452893	1.00[AMR][1000 genomes]
rs73458585	1.00[AMR][1000 genomes]
rs73458586	1.00[AMR][1000 genomes]
rs73458588	1.00[AMR][1000 genomes]
rs7747867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
4	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:73840200-73848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:73840200-73848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:73840400-73848000	Weak transcription	NHEK	skin
8	chr6:73841400-73846400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73842000-73846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73842000-73855600	Weak transcription	HSMM	muscle
11	chr6:73843600-73846000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:73843600-73846400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:73844400-73845800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:73844600-73847600	Weak transcription	GM12878-XiMat	blood
16	chr6:73844600-73849800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:73844800-73846800	Weak transcription	NHLF	lung
19	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:73845000-73846400	Strong transcription	Primary B cells from cord blood	blood
21	chr6:73845400-73847800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links