Variant report

Variant	rs73457715
Chromosome Location	chr6:56672312-56672313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56670684..56672467-chr6:56713184..56714995,2	MCF-7	breast:
2	chr6:56667404..56671001-chr6:56671318..56674766,5	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6933591	1.00[AMR][1000 genomes]
rs7773931	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1034418	chr6:56651245-56700449	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56659400-56674000	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56661400-56672800	Weak transcription	Ovary	ovary
3	chr6:56662600-56672800	Weak transcription	Left Ventricle	heart
4	chr6:56664000-56673600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:56667200-56672800	Enhancers	Brain Substantia Nigra	brain
6	chr6:56667200-56673600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:56667200-56674600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:56667400-56673600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:56667400-56673600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:56667400-56674200	Enhancers	Brain Anterior Caudate	brain
11	chr6:56667400-56674200	Enhancers	Brain Hippocampus Middle	brain
12	chr6:56667400-56674600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:56667600-56672800	Weak transcription	Right Atrium	heart
14	chr6:56668000-56672400	Weak transcription	HMEC	breast
15	chr6:56668000-56674400	Enhancers	NH-A	brain
16	chr6:56668000-56679200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:56668800-56672800	Weak transcription	Right Ventricle	heart
18	chr6:56668800-56673000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:56668800-56682600	Weak transcription	Aorta	Aorta
20	chr6:56669000-56673400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:56669600-56674200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:56670200-56672800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:56670400-56672800	Weak transcription	NHEK	skin
24	chr6:56670600-56672400	Enhancers	A549	lung
25	chr6:56670600-56672600	Enhancers	NHDF-Ad	bronchial
26	chr6:56670600-56672800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:56670600-56673600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:56670600-56673800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:56670800-56672600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:56670800-56672800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:56670800-56674600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:56671200-56672400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:56671200-56672800	Weak transcription	Brain Angular Gyrus	brain
34	chr6:56671200-56673400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:56671200-56674000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:56671200-56674200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:56671400-56672600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:56671400-56673000	Weak transcription	GM12878-XiMat	blood
39	chr6:56671400-56673000	Genic enhancers	HSMM	muscle
40	chr6:56671400-56673600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:56671400-56673600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:56671600-56672400	Weak transcription	NHLF	lung
43	chr6:56671600-56672600	Weak transcription	Fetal Heart	heart
44	chr6:56671600-56672800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:56671600-56672800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:56671600-56672800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:56671600-56672800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:56671600-56675600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:56671600-56679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:56671800-56672800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links