Variant report

Variant	rs73458357
Chromosome Location	chr13:38320398-38320399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17056542	1.00[AFR][1000 genomes]
rs56687878	0.93[AFR][1000 genomes]
rs59131290	0.93[AFR][1000 genomes]
rs73458344	1.00[AFR][1000 genomes]
rs73458353	1.00[AFR][1000 genomes]
rs73458365	0.82[AFR][1000 genomes]
rs73458367	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3383124	chr13:38318752-38320800	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38307600-38330800	Weak transcription	Ovary	ovary
2	chr13:38308200-38328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38309200-38320600	Weak transcription	NHLF	lung
4	chr13:38309600-38321000	Weak transcription	Osteobl	bone
5	chr13:38316000-38321000	Weak transcription	NHDF-Ad	bronchial
6	chr13:38316000-38328200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:38316600-38320600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr13:38319000-38323000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:38319200-38320800	Weak transcription	NH-A	brain
10	chr13:38319800-38322200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:38320200-38320400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:38320200-38320400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr13:38320200-38322000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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