Variant report

Variant	rs73458383
Chromosome Location	chr9:78795584-78795585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78795377..78797478-chr9:78802711..78805667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099139	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60378110	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv466422	chr9:78775570-78796522	Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv614691	chr9:78775570-78796522	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78790400-78795600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:78790400-78795600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:78790400-78795600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:78790400-78795600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:78790400-78795800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:78790400-78795800	Weak transcription	NHDF-Ad	bronchial
7	chr9:78790400-78796000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:78790400-78796000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:78790400-78796000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:78790400-78796000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:78790400-78796000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:78790400-78796000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:78790400-78796000	Weak transcription	Spleen	Spleen
14	chr9:78790400-78796200	Weak transcription	Right Atrium	heart
15	chr9:78790400-78796800	Weak transcription	Colonic Mucosa	Colon
16	chr9:78790400-78798400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:78790400-78799200	Weak transcription	HUVEC	blood vessel
18	chr9:78790400-78800000	Weak transcription	Fetal Kidney	kidney
19	chr9:78790400-78801400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:78790400-78802600	Weak transcription	Liver	Liver
21	chr9:78790400-78803200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:78790400-78803800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:78790400-78804200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:78790400-78805000	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:78790400-78806200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:78790400-78806200	Weak transcription	Fetal Brain Male	brain
27	chr9:78790400-78806400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:78790400-78807400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:78790400-78810200	Weak transcription	Brain Angular Gyrus	brain
30	chr9:78790400-78810400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:78790400-78810400	Weak transcription	Brain Anterior Caudate	brain
32	chr9:78790400-78810400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:78790400-78811200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:78790400-78811400	Weak transcription	Fetal Lung	lung
35	chr9:78790400-78811400	Weak transcription	Right Ventricle	heart
36	chr9:78790400-78811600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:78790400-78813200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:78790400-78813600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:78790400-78818000	Weak transcription	Small Intestine	intestine
40	chr9:78790600-78796000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:78792400-78796000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr9:78792800-78802200	Strong transcription	Primary T cells from cord blood	blood
43	chr9:78793200-78800600	Weak transcription	Fetal Brain Female	brain
44	chr9:78794000-78798600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:78794000-78799200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr9:78794000-78809200	Strong transcription	Fetal Thymus	thymus
47	chr9:78794200-78797800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:78794400-78797000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:78794400-78797200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr9:78794400-78797200	Strong transcription	Aorta	Aorta

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