Variant report

Variant	rs73459265
Chromosome Location	chr15:78681952-78681953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78681164..78684060-chr15:78688806..78691444,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28654165	0.98[ASN][1000 genomes]
rs3825849	0.97[ASN][1000 genomes]
rs61185638	0.94[ASN][1000 genomes]
rs7172878	0.98[ASN][1000 genomes]
rs7172999	0.98[ASN][1000 genomes]
rs7177895	0.98[ASN][1000 genomes]
rs7179397	0.98[ASN][1000 genomes]
rs73459268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459270	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73459290	0.98[ASN][1000 genomes]
rs73461510	0.97[ASN][1000 genomes]
rs73461513	0.98[ASN][1000 genomes]
rs8035749	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78678800-78682200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:78678800-78682400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:78679000-78682600	Enhancers	Fetal Stomach	stomach
5	chr15:78679600-78682600	Enhancers	Fetal Muscle Leg	muscle
6	chr15:78680200-78683800	Enhancers	Placenta	Placenta
7	chr15:78680200-78684800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:78680400-78682400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:78680400-78684800	Weak transcription	Fetal Brain Female	brain
10	chr15:78681000-78682000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:78681200-78682000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:78681200-78682200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:78681200-78682200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:78681200-78682200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr15:78681200-78682200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:78681200-78682400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:78681200-78682400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:78681200-78682400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:78681200-78682600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr15:78681200-78684400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:78681400-78682000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:78681400-78682200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:78681400-78682200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr15:78681400-78682200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:78681400-78682200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:78681400-78682200	Enhancers	Fetal Lung	lung
27	chr15:78681400-78682200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr15:78681400-78682400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr15:78681400-78682400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:78681400-78682400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:78681400-78682800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:78681400-78683400	Enhancers	Adipose Nuclei	Adipose
33	chr15:78681600-78682000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:78681600-78682000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:78681600-78682000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
36	chr15:78681600-78683800	Enhancers	NHDF-Ad	bronchial
37	chr15:78681800-78682200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:78681800-78688800	Weak transcription	Spleen	Spleen

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