Variant report

Variant	rs73459735
Chromosome Location	chr6:56780596-56780597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56780041..56782514-chr6:56808634..56811006,2	K562	blood:
2	chr6:56779944..56782895-chr6:56786364..56788046,2	MCF-7	breast:
3	chr6:56773281..56775523-chr6:56776609..56780879,5	K562	blood:

Variant related genes	Relation type
ENSG00000200224	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11963379	1.00[ASN][1000 genomes]
rs1599281	1.00[ASN][1000 genomes]
rs17450853	1.00[ASN][1000 genomes]
rs17685185	1.00[ASN][1000 genomes]
rs17752412	1.00[ASN][1000 genomes]
rs17752435	1.00[ASN][1000 genomes]
rs1901383	1.00[AMR][1000 genomes]
rs1966847	1.00[AMR][1000 genomes]
rs34752771	1.00[ASN][1000 genomes]
rs35527216	1.00[ASN][1000 genomes]
rs4490669	1.00[ASN][1000 genomes]
rs56008741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56968726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57331007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57842130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59524770	1.00[ASN][1000 genomes]
rs59744924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60547490	1.00[ASN][1000 genomes]
rs61340009	1.00[ASN][1000 genomes]
rs61409759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73455810	1.00[AMR][1000 genomes]
rs73459707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73459720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73459727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73459728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73459729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73459730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs748996	1.00[ASN][1000 genomes]
rs7738415	1.00[AMR][1000 genomes]
rs9475745	1.00[ASN][1000 genomes]
rs9475752	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv5315	chr6:56752042-56798761	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56775800-56780600	Enhancers	NHLF	lung
2	chr6:56775800-56781200	Enhancers	Osteobl	bone
3	chr6:56776600-56781200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:56777000-56781000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:56777400-56781400	Enhancers	K562	blood
6	chr6:56777400-56781800	Weak transcription	HMEC	breast
7	chr6:56777600-56792600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:56777600-56792600	Weak transcription	NH-A	brain
9	chr6:56777800-56780800	Enhancers	NHDF-Ad	bronchial
10	chr6:56777800-56782200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:56778000-56781000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:56778000-56782200	Enhancers	Fetal Brain Male	brain
13	chr6:56778200-56780800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:56778200-56781200	Enhancers	Brain Anterior Caudate	brain
15	chr6:56778400-56781000	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:56778400-56792800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:56778800-56782000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:56779000-56781000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:56779200-56780600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:56779200-56780600	Enhancers	Brain Angular Gyrus	brain
21	chr6:56779600-56780600	Enhancers	GM12878-XiMat	blood
22	chr6:56779600-56782000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:56779800-56780800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:56779800-56782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:56779800-56782800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:56780400-56781200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:56780400-56781200	Enhancers	Fetal Brain Female	brain
28	chr6:56780400-56781800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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