Variant report

Variant	rs73460415
Chromosome Location	chr15:93197062-93197063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93197033-93197836	GM12878	blood:	n/a	n/a
2	RUNX3	chr15:93196932-93197690	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:93197061-93197143	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93145840..93149737-chr15:93196292..93199149,3	MCF-7	breast:
2	chr15:93196488..93198404-chr17:67442282..67443797,2	MCF-7	breast:

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000271763	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1874507	0.83[ASN][1000 genomes]
rs73460406	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73460412	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
3	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
4	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:93191000-93197400	Weak transcription	HSMMtube	muscle
6	chr15:93192000-93197400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:93193800-93199000	Enhancers	Fetal Heart	heart
8	chr15:93194000-93197200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:93194000-93197400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:93194200-93197400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:93194200-93198200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:93194400-93197400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:93194400-93198400	Weak transcription	Brain Anterior Caudate	brain
14	chr15:93194600-93197400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:93194600-93197600	Weak transcription	Fetal Brain Female	brain
16	chr15:93194600-93198400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:93195000-93197600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:93195200-93197200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:93195200-93197200	Enhancers	Placenta	Placenta
20	chr15:93195200-93199600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr15:93195400-93197200	Strong transcription	Fetal Stomach	stomach
22	chr15:93195400-93197200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:93195400-93197600	Flanking Active TSS	Pancreas	Pancrea
24	chr15:93195400-93197600	Enhancers	Right Ventricle	heart
25	chr15:93195600-93197200	Genic enhancers	Fetal Lung	lung
26	chr15:93195600-93197600	Enhancers	Fetal Intestine Large	intestine
27	chr15:93195600-93197600	Genic enhancers	Fetal Muscle Leg	muscle
28	chr15:93195600-93198000	Enhancers	Right Atrium	heart
29	chr15:93195800-93197200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:93195800-93197400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:93195800-93197600	Enhancers	Brain Angular Gyrus	brain
32	chr15:93195800-93198400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:93196000-93197200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:93196000-93197400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:93196000-93197400	Enhancers	Duodenum Mucosa	Duodenum
36	chr15:93196200-93197200	Enhancers	Gastric	stomach
37	chr15:93196200-93197200	Enhancers	HUVEC	blood vessel
38	chr15:93196200-93198000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:93196200-93198200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:93196400-93197200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:93196400-93197200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:93196400-93197200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:93196400-93197200	Weak transcription	Fetal Intestine Small	intestine
44	chr15:93196600-93197200	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr15:93196600-93197200	Enhancers	HSMM	muscle
46	chr15:93196600-93197600	Genic enhancers	Fetal Muscle Trunk	muscle
47	chr15:93196600-93199200	Enhancers	Fetal Brain Male	brain
48	chr15:93196800-93197200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
49	chr15:93196800-93197200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:93196800-93197200	Enhancers	Spleen	Spleen

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