Variant report

Variant	rs73461823
Chromosome Location	chr13:39326206-39326207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17058707	1.00[AMR][1000 genomes]
rs17058710	1.00[AMR][1000 genomes]
rs17058720	1.00[AMR][1000 genomes]
rs2595570	1.00[AMR][1000 genomes]
rs73455952	1.00[AMR][1000 genomes]
rs73459881	1.00[AMR][1000 genomes]
rs73459885	1.00[AMR][1000 genomes]
rs73459893	1.00[AMR][1000 genomes]
rs73461813	1.00[AMR][1000 genomes]
rs73461841	1.00[AMR][1000 genomes]
rs73461848	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39322400-39326800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:39322800-39337200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:39323200-39327800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:39325000-39328400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:39325200-39328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:39325400-39328600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:39325400-39328800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr13:39325600-39326400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:39325800-39326800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:39325800-39326800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:39325800-39327000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:39325800-39332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:39326000-39326400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:39326200-39329000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:39326200-39332600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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