Variant report

Variant	rs73461877
Chromosome Location	chr13:39351888-39351889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17058513	1.00[EUR][1000 genomes]
rs2483422	1.00[EUR][1000 genomes]
rs58892971	1.00[EUR][1000 genomes]
rs61177158	1.00[EUR][1000 genomes]
rs73455906	1.00[EUR][1000 genomes]
rs73461816	1.00[EUR][1000 genomes]
rs73461845	1.00[EUR][1000 genomes]
rs73461846	1.00[EUR][1000 genomes]
rs7996253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:39346600-39365000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:39346600-39370800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:39347800-39356000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39350600-39370600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:39351200-39354600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:39351400-39352200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:39351600-39359000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:39351800-39352200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links