Variant report

Variant	rs73463107
Chromosome Location	chr18:39879305-39879306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:39878555..39879376-chr18:40976072..40976934,3	MCF-7	breast:
2	chr18:39631810..39632517-chr18:39878504..39879351,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2015741	1.00[AMR][1000 genomes]
rs4890392	1.00[AMR][1000 genomes]
rs6507468	1.00[AMR][1000 genomes]
rs7239074	1.00[AMR][1000 genomes]
rs73456907	1.00[AMR][1000 genomes]
rs73457397	1.00[AMR][1000 genomes]
rs73457959	1.00[AMR][1000 genomes]
rs73457961	1.00[AMR][1000 genomes]
rs73459540	1.00[AMR][1000 genomes]
rs73461300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39878800-39879400	Active TSS	Osteobl	bone
2	chr18:39879000-39879400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr18:39879000-39879400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:39879000-39879400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:39879000-39879400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:39879000-39879400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:39879000-39879400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:39879000-39879400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:39879000-39879400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:39879000-39879400	Active TSS	Aorta	Aorta
11	chr18:39879000-39879400	Enhancers	Liver	Liver
12	chr18:39879000-39879400	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr18:39879000-39879400	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr18:39879000-39879400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr18:39879000-39879400	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr18:39879000-39879400	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr18:39879000-39879400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr18:39879000-39879400	Flanking Active TSS	Fetal Brain Male	brain
19	chr18:39879000-39879400	Enhancers	Fetal Lung	lung
20	chr18:39879000-39879400	Active TSS	Ovary	ovary
21	chr18:39879000-39879400	Active TSS	Right Atrium	heart
22	chr18:39879000-39879400	Active TSS	Right Ventricle	heart
23	chr18:39879000-39879400	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr18:39879000-39879400	Enhancers	NH-A	brain
25	chr18:39879000-39879400	Active TSS	NHDF-Ad	bronchial
26	chr18:39879000-39879600	Active TSS	Brain Angular Gyrus	brain
27	chr18:39879000-39879600	Active TSS	Brain Cingulate Gyrus	brain
28	chr18:39879000-39879600	Enhancers	Fetal Stomach	stomach
29	chr18:39879000-39879800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr18:39879000-39879800	Flanking Active TSS	Fetal Brain Female	brain
31	chr18:39879200-39879400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:39879200-39879400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr18:39879200-39879400	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr18:39879200-39879400	Flanking Active TSS	Brain Hippocampus Middle	brain
35	chr18:39879200-39879400	Flanking Active TSS	Colon Smooth Muscle	Colon
36	chr18:39879200-39879400	Flanking Active TSS	Fetal Kidney	kidney
37	chr18:39879200-39879400	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr18:39879200-39879400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr18:39879200-39879600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr18:39879200-39879600	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr18:39879200-39879600	Enhancers	Fetal Muscle Trunk	muscle
42	chr18:39879200-39879600	Enhancers	Fetal Muscle Leg	muscle

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