Variant report

Variant	rs73463845
Chromosome Location	chr6:75924109-75924110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75921545..75925190-chr6:75927734..75930385,3	K562	blood:
2	chr6:75920298..75925190-chr6:75927139..75929991,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73463837	0.95[AFR][1000 genomes]
rs73463838	0.95[AFR][1000 genomes]
rs73463840	0.95[AFR][1000 genomes]
rs73463847	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv463155	chr6:75789526-75980419	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv603762	chr6:75789526-75980419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
8	nsv603763	chr6:75923605-76009426	Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75917600-75946600	Weak transcription	Lung	lung
2	chr6:75918800-75924600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:75918800-75925000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:75918800-75925000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:75918800-75926400	Weak transcription	NHDF-Ad	bronchial
6	chr6:75918800-75926600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:75918800-75926600	Weak transcription	Ovary	ovary
8	chr6:75918800-75926800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:75918800-75926800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:75919000-75924600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:75919200-75925000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:75919800-75926600	Weak transcription	Fetal Lung	lung
13	chr6:75921600-75925800	Enhancers	Fetal Heart	heart
14	chr6:75921800-75925000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:75921800-75925000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:75921800-75926400	Weak transcription	NH-A	brain
17	chr6:75922000-75924600	Weak transcription	NHEK	skin
18	chr6:75922000-75926600	Weak transcription	Hela-S3	cervix
19	chr6:75922000-75926800	Weak transcription	NHLF	lung
20	chr6:75922200-75925000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:75922400-75924800	Weak transcription	Liver	Liver
22	chr6:75922600-75926400	Weak transcription	Left Ventricle	heart
23	chr6:75922600-75926600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:75922600-75926600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:75922600-75926600	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:75922600-75926600	Weak transcription	HSMMtube	muscle
27	chr6:75922600-75947000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:75922800-75926600	Weak transcription	Adipose Nuclei	Adipose
29	chr6:75922800-75926600	Weak transcription	Osteobl	bone
30	chr6:75922800-75926800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:75922800-75927800	Weak transcription	Right Atrium	heart
32	chr6:75922800-75933200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:75923000-75926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:75923200-75924200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:75923200-75926600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:75923200-75926600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:75923200-75932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:75923600-75927600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:75923800-75924800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:75923800-75924800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:75923800-75926800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:75923800-75933000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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