Variant report

Variant	rs73464404
Chromosome Location	chr6:46020394-46020395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46010679..46013436-chr6:46019220..46021505,2	K562	blood:
2	chr6:46013085..46015232-chr6:46018774..46021155,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484840	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13328271	0.86[AMR][1000 genomes]
rs1578005	0.82[EUR][1000 genomes]
rs2179993	0.86[AMR][1000 genomes]
rs59238881	0.86[AMR][1000 genomes]
rs6906803	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6919720	0.86[AMR][1000 genomes]
rs6921481	0.86[AMR][1000 genomes]
rs6927513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936849	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7771759	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9296477	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9463170	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9472661	0.82[AMR][1000 genomes]
rs9472666	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46013000-46021400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:46017800-46021400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:46017800-46021800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:46018000-46021000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:46018000-46022200	Enhancers	NHDF-Ad	bronchial
6	chr6:46018000-46024200	Enhancers	Fetal Intestine Large	intestine
7	chr6:46018600-46021200	Enhancers	Fetal Heart	heart
8	chr6:46018600-46022200	Enhancers	Psoas Muscle	Psoas
9	chr6:46018800-46020400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:46018800-46020600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr6:46018800-46020800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:46018800-46022200	Enhancers	HSMM	muscle
13	chr6:46018800-46023200	Enhancers	Fetal Intestine Small	intestine
14	chr6:46019000-46020800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:46019000-46022000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:46019000-46023800	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:46019200-46022600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:46019400-46020400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:46019600-46020400	Weak transcription	Colonic Mucosa	Colon
20	chr6:46019600-46021200	Enhancers	NHLF	lung
21	chr6:46019600-46021600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:46019600-46022200	Enhancers	Right Atrium	heart
23	chr6:46019600-46022200	Enhancers	HSMMtube	muscle
24	chr6:46019600-46022800	Enhancers	Adipose Nuclei	Adipose
25	chr6:46020200-46021000	Enhancers	Lung	lung
26	chr6:46020200-46022200	Enhancers	Right Ventricle	heart
27	chr6:46020200-46022800	Enhancers	Left Ventricle	heart
28	chr6:46020200-46023000	Enhancers	Small Intestine	intestine

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