Variant report
| Variant | rs73464413 |
|---|---|
| Chromosome Location | chr6:74027842-74027843 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFF | chr6:74027653-74027974 | HepG2 | liver: | n/a | chr6:74027803-74027821 |
| 2 | ZNF384 | chr6:74027758-74028081 | K562 | blood: | n/a | n/a |
| 3 | CBX3 | chr6:74027786-74028007 | K562 | blood: | n/a | n/a |
| 4 | MAFF | chr6:74027708-74027959 | K562 | blood: | n/a | chr6:74027803-74027821 |
| 5 | MAFK | chr6:74027648-74027995 | HepG2 | liver: | n/a | chr6:74027805-74027820 |
| 6 | SETDB1 | chr6:74027588-74028314 | U2OS | brain: | n/a | n/a |
| 7 | MAFK | chr6:74027666-74027984 | HepG2 | liver: | n/a | chr6:74027805-74027820 |
| 8 | MAFK | chr6:74027722-74027968 | K562 | blood: | n/a | chr6:74027805-74027820 |
| 9 | ZNF384 | chr6:74027800-74028007 | GM12878 | blood: | n/a | n/a |
| 10 | MAFK | chr6:74027649-74027971 | IMR90 | lung: | n/a | chr6:74027805-74027820 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:74017750..74019913-chr6:74026260..74028005,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SDCBP2P1 | TF binding region |
| ENSG00000135314 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs16883609 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv518874 | chr6:74014468-74041424 | Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv966628 | chr6:74020000-74034657 | Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
