Variant report

Variant	rs73464436
Chromosome Location	chr13:38034687-38034688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12873927	0.87[AFR][1000 genomes]
rs17055812	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055914	1.00[AMR][1000 genomes]
rs59513287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60802298	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60897708	1.00[AMR][1000 genomes]
rs7323037	1.00[AMR][1000 genomes]
rs73448507	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448575	1.00[AMR][1000 genomes]
rs73448579	1.00[AMR][1000 genomes]
rs73448581	1.00[AMR][1000 genomes]
rs73448583	1.00[AMR][1000 genomes]
rs73448585	1.00[AMR][1000 genomes]
rs73448586	1.00[AMR][1000 genomes]
rs73448588	1.00[AMR][1000 genomes]
rs73448590	1.00[AMR][1000 genomes]
rs73448599	1.00[AMR][1000 genomes]
rs73464419	0.81[AFR][1000 genomes]
rs73464432	1.00[AMR][1000 genomes]
rs73464453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38033400-38035200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:38033600-38035000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:38034000-38035000	Enhancers	NHDF-Ad	bronchial
4	chr13:38034200-38035200	Enhancers	Colon Smooth Muscle	Colon
5	chr13:38034400-38034800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:38034600-38035000	Enhancers	Osteobl	bone

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