Variant report

Variant	rs73464693
Chromosome Location	chr7:150307886-150307887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6954602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971039	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73475303	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73475321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784767	1.00[AMR][1000 genomes]
rs7796722	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9768402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9768415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv436546	chr7:150301057-150308010	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv970607	chr7:150301369-150311530	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3370473	chr7:150304419-150308717	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3339481	chr7:150306019-150310317	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150300600-150316800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:150302600-150309400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:150306800-150308000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:150307000-150308400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:150307600-150309000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:150307600-150309000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150307600-150309200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:150307800-150308000	Enhancers	Primary T cells from cord blood	blood
9	chr7:150307800-150309000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:150307800-150309800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:150307800-150310200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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