Variant report

Variant	rs73465391
Chromosome Location	chr6:69678453-69678454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11965693	1.00[AMR][1000 genomes]
rs58094255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465372	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465383	1.00[AMR][1000 genomes]
rs73465384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467706	1.00[AMR][1000 genomes]
rs73467710	1.00[AMR][1000 genomes]
rs73467720	1.00[AMR][1000 genomes]
rs73480143	1.00[AMR][1000 genomes]
rs73480156	1.00[AMR][1000 genomes]
rs73480157	1.00[AMR][1000 genomes]
rs73480158	1.00[AMR][1000 genomes]
rs73480165	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69677600-69678600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:69677800-69678600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:69678000-69678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:69678000-69678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:69678200-69679400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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