Variant report
| Variant | rs73465637 |
|---|---|
| Chromosome Location | chr6:69232039-69232040 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:41380326..41381992-chr6:69231475..69232995,3 | MCF-7 | breast: | |
| 2 | chr17:41463798..41466662-chr6:69229976..69232995,3 | K562 | blood: | |
| 3 | chr17:41382033..41383660-chr6:69231475..69232975,2 | K562 | blood: | |
| 4 | chr17:41380252..41382150-chr6:69231475..69232995,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000188825 | Chromatin interaction |
| ENSG00000236383 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11965735 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11966659 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11967352 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56111140 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6922386 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73450195 | 0.92[AFR][1000 genomes] |
| rs73460908 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73460910 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415097 | chr6:68536406-69244164 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020545 | chr6:69119445-69310136 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv463147 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv603607 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv830680 | chr6:69192214-69351103 | Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 7 | nsv511320 | chr6:69214502-69249128 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv16262 | chr6:69230104-69242009 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
