Variant report

Variant	rs73466036
Chromosome Location	chr11:46421359-46421360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46411065..46412828-chr11:46420913..46422705,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11038894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280028	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12280656	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1873130	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56977210	0.85[AFR][1000 genomes]
rs6485680	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73466034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467915	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7946094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46413000-46425000	Weak transcription	Fetal Heart	heart
2	chr11:46414200-46429000	Weak transcription	Hela-S3	cervix
3	chr11:46414200-46432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46414600-46425800	Weak transcription	HSMM	muscle
5	chr11:46414600-46429200	Weak transcription	HMEC	breast
6	chr11:46414800-46424200	Weak transcription	Right Atrium	heart
7	chr11:46414800-46424600	Weak transcription	Psoas Muscle	Psoas
8	chr11:46414800-46426200	Weak transcription	NH-A	brain
9	chr11:46414800-46428600	Weak transcription	A549	lung
10	chr11:46414800-46429200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:46414800-46436800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:46415000-46424800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:46415000-46428800	Weak transcription	Stomach Mucosa	stomach
14	chr11:46415000-46429000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:46415000-46429200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:46415000-46432800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:46415200-46424400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:46415200-46424600	Weak transcription	Fetal Kidney	kidney
19	chr11:46415200-46426000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:46415200-46426800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:46415200-46430600	Weak transcription	K562	blood
22	chr11:46415400-46423400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:46416200-46429000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:46416200-46429800	Weak transcription	HUVEC	blood vessel
25	chr11:46416400-46428400	Weak transcription	Small Intestine	intestine
26	chr11:46416400-46429200	Weak transcription	NHDF-Ad	bronchial
27	chr11:46417000-46421800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:46417000-46421800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:46417000-46424600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:46417000-46435800	Strong transcription	Fetal Intestine Small	intestine
31	chr11:46417000-46444400	Strong transcription	Fetal Stomach	stomach
32	chr11:46417200-46439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:46417400-46427200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:46417400-46432200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:46417400-46432600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:46417600-46423800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:46417600-46427600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
39	chr11:46418200-46422600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:46419200-46424400	Weak transcription	Fetal Lung	lung
41	chr11:46419200-46431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:46419400-46421400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:46419400-46422600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:46419400-46425000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:46419400-46425000	Weak transcription	Fetal Brain Female	brain
46	chr11:46419400-46426600	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:46419400-46428800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:46419600-46422400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:46419600-46424200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:46419600-46424400	Weak transcription	HSMMtube	muscle

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