Variant report

Variant	rs73466515
Chromosome Location	chr15:100272337-100272338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:100272240-100272367	ProgFib	skin:	n/a	n/a
2	STAT3	chr15:100272274-100272456	MCF10A-Er-Src	breast:	n/a	n/a
3	MAZ	chr15:100272245-100274211	IMR90	lung:	n/a	chr15:100273829-100273839 chr15:100273091-100273101 chr15:100273030-100273039
4	BACH1	chr15:100272134-100272426	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr15:100272301-100272445	MCF10A-Er-Src	breast:	n/a	n/a
6	BRCA1	chr15:100272232-100272847	H1-hESC	embryonic stem cell:	n/a	chr15:100272342-100272349
7	HCFC1	chr15:100272137-100274363	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
LYSMD4	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12185079	0.85[AMR][1000 genomes]
rs2123926	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv428313	chr15:100236203-100757039	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv904563	chr15:100239546-100274747	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv570730	chr15:100240910-100700520	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1045838	chr15:100243067-101032218	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv904564	chr15:100245296-100723798	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv932678	chr15:100250311-101012358	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100244600-100272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:100249600-100272800	Weak transcription	Small Intestine	intestine
3	chr15:100253600-100272400	Weak transcription	Stomach Mucosa	stomach
4	chr15:100261600-100272400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr15:100261800-100272600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:100262000-100272400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:100262200-100272400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:100262800-100272400	Weak transcription	Primary B cells from cord blood	blood
9	chr15:100266200-100272400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:100267600-100272400	Enhancers	Fetal Heart	heart
11	chr15:100269200-100272400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:100269600-100272400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:100269600-100272600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:100269800-100272400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:100269800-100272400	Weak transcription	Aorta	Aorta
16	chr15:100269800-100272400	Weak transcription	Esophagus	oesophagus
17	chr15:100269800-100272400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:100269800-100272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:100269800-100272800	Weak transcription	Gastric	stomach
20	chr15:100270000-100272400	Weak transcription	Primary T cells from cord blood	blood
21	chr15:100270000-100272400	Enhancers	HepG2	liver
22	chr15:100270200-100272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:100270400-100272400	Weak transcription	Pancreas	Pancrea
24	chr15:100270600-100272400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:100270600-100272400	Weak transcription	HSMM	muscle
26	chr15:100271200-100272400	Weak transcription	Liver	Liver
27	chr15:100271200-100274000	Active TSS	Fetal Intestine Large	intestine
28	chr15:100271400-100272400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
29	chr15:100271400-100272600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr15:100271400-100273000	Flanking Active TSS	HMEC	breast
31	chr15:100271600-100272400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr15:100271600-100272400	Enhancers	Placenta	Placenta
33	chr15:100271600-100272600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr15:100271600-100272600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr15:100271600-100273000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
36	chr15:100271600-100273000	Flanking Active TSS	NHEK	skin
37	chr15:100271600-100273200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:100271600-100274200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr15:100271800-100272400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:100271800-100272400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:100271800-100272400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:100271800-100272400	Enhancers	Brain Anterior Caudate	brain
43	chr15:100271800-100272400	Enhancers	Left Ventricle	heart
44	chr15:100271800-100272400	Enhancers	Ovary	ovary
45	chr15:100271800-100272400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr15:100271800-100272600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr15:100271800-100272600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:100271800-100272600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:100271800-100272600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:100271800-100272600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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