Variant report

Variant	rs73467353
Chromosome Location	chr13:39922168-39922169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3344979	chr13:39922082-39922508	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39910600-39922400	Weak transcription	Aorta	Aorta
3	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
5	chr13:39913200-39922400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:39914000-39922400	Weak transcription	Gastric	stomach
7	chr13:39914200-39924400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:39914400-39922800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:39914800-39924600	Weak transcription	Fetal Stomach	stomach
10	chr13:39915800-39924200	Weak transcription	Osteobl	bone
11	chr13:39916000-39922200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:39916200-39928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:39916800-39928000	Weak transcription	NHDF-Ad	bronchial
14	chr13:39917000-39922400	Weak transcription	Lung	lung
15	chr13:39918200-39928000	Weak transcription	Esophagus	oesophagus
16	chr13:39918400-39923800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr13:39918600-39922200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:39919200-39922200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:39919800-39923000	Enhancers	Right Atrium	heart
20	chr13:39920000-39922400	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:39920400-39922200	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:39920400-39923800	Weak transcription	HSMMtube	muscle
23	chr13:39921600-39922400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
24	chr13:39921600-39923000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:39921800-39922200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr13:39921800-39922200	Enhancers	Brain Substantia Nigra	brain
27	chr13:39921800-39922400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
28	chr13:39921800-39922600	Weak transcription	Right Ventricle	heart
29	chr13:39921800-39925400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr13:39922000-39922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr13:39922000-39922600	Flanking Active TSS	Fetal Heart	heart
32	chr13:39922000-39923000	Enhancers	Left Ventricle	heart

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