Variant report

Variant	rs73469163
Chromosome Location	chr18:39922216-39922217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73469118	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39917000-39923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:39920200-39923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:39920800-39922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:39921800-39922600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:39922000-39922600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:39922200-39922400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:39922200-39922400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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