Variant report

Variant	rs73469290
Chromosome Location	chr6:78171519-78171520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964749	1.00[EUR][1000 genomes]
rs1819764	1.00[EUR][1000 genomes]
rs1891753	1.00[EUR][1000 genomes]
rs55740034	1.00[EUR][1000 genomes]
rs55956282	1.00[EUR][1000 genomes]
rs58500183	1.00[EUR][1000 genomes]
rs59024780	1.00[EUR][1000 genomes]
rs61480810	1.00[EUR][1000 genomes]
rs61706376	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471210	1.00[EUR][1000 genomes]
rs73471225	1.00[EUR][1000 genomes]
rs73471232	1.00[EUR][1000 genomes]
rs73471259	1.00[EUR][1000 genomes]
rs73760610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758062	chr6:78100020-78283042	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2759445	chr6:78100020-78283042	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78166600-78171800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:78167400-78171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:78167600-78171600	Weak transcription	HMEC	breast
4	chr6:78169200-78171600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:78169400-78172000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:78169400-78174600	Active TSS	Aorta	Aorta
7	chr6:78170000-78171600	Active TSS	Fetal Stomach	stomach
8	chr6:78170000-78171600	Weak transcription	Stomach Mucosa	stomach
9	chr6:78170200-78171600	Active TSS	HUVEC	blood vessel
10	chr6:78170600-78171800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:78171000-78172400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:78171400-78171600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:78171400-78171600	Active TSS	Brain Germinal Matrix	brain
14	chr6:78171400-78171600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:78171400-78171600	Flanking Bivalent TSS/Enh	Fetal Heart	heart
16	chr6:78171400-78171800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr6:78171400-78171800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:78171400-78171800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:78171400-78171800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
20	chr6:78171400-78172000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
21	chr6:78171400-78172200	Flanking Active TSS	NH-A	brain
22	chr6:78171400-78172600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:78171400-78172600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
24	chr6:78171400-78172800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
25	chr6:78171400-78173600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
26	chr6:78171400-78174400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:78171400-78174600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:78171400-78174600	Bivalent/Poised TSS	Brain Anterior Caudate	brain

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