Variant report

Variant	rs73470720
Chromosome Location	chr11:58336349-58336350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58334595..58336830-chr11:58344881..58347301,2	MCF-7	breast:
2	chr11:58334129..58337233-chr11:58345487..58348249,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186660	Chromatin interaction
ENSG00000255073	Chromatin interaction
ENSG00000110031	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7481388	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:58315600-58340400	Weak transcription	Stomach Mucosa	stomach
5	chr11:58318200-58336400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
7	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
8	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:58318800-58336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:58318800-58340600	Weak transcription	NHLF	lung
11	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
12	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
13	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
14	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:58320600-58338200	Weak transcription	HMEC	breast
16	chr11:58321600-58336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:58321600-58337200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:58321600-58340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:58321800-58340400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
21	chr11:58321800-58345000	Weak transcription	Ovary	ovary
22	chr11:58322000-58336400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:58322200-58336400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:58322200-58337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:58322400-58336400	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:58322400-58336800	Weak transcription	Spleen	Spleen
27	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
28	chr11:58327200-58336400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr11:58329400-58341000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:58329400-58342600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:58329400-58344400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:58330200-58336400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:58330200-58343000	Weak transcription	Fetal Kidney	kidney
34	chr11:58330400-58336800	Weak transcription	Pancreas	Pancrea
35	chr11:58330400-58338800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr11:58330600-58336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:58330600-58345000	Weak transcription	Gastric	stomach
38	chr11:58331000-58338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:58331400-58336400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:58331400-58341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:58331600-58336600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:58332400-58336400	Weak transcription	Fetal Intestine Large	intestine
43	chr11:58332600-58336400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:58332600-58336400	Weak transcription	Osteobl	bone
45	chr11:58332800-58340200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:58333000-58336400	Weak transcription	Lung	lung
47	chr11:58333000-58336400	Weak transcription	Thymus	Thymus
48	chr11:58333400-58336400	Weak transcription	Aorta	Aorta
49	chr11:58333400-58336400	Weak transcription	Fetal Intestine Small	intestine
50	chr11:58333400-58336400	Weak transcription	Fetal Stomach	stomach

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