Variant report

Variant	rs73471305
Chromosome Location	chr6:69987454-69987455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61636212	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467758	1.00[AMR][1000 genomes]
rs73467760	1.00[AMR][1000 genomes]
rs73471307	0.83[AFR][1000 genomes]
rs73471317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471330	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473320	1.00[AMR][1000 genomes]
rs73473323	1.00[AMR][1000 genomes]
rs73473363	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69985000-69989200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:69985000-69989200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69985400-69989000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69986400-69989200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69986400-69989200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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