Variant report

Variant	rs73471360
Chromosome Location	chr7:150262398-150262399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:150262354-150262705	K562	blood:	n/a	chr7:150262534-150262545
2	CEBPB	chr7:150262385-150262720	HepG2	liver:	n/a	chr7:150262534-150262545
3	CEBPB	chr7:150262346-150262711	K562	blood:	n/a	chr7:150262534-150262545
4	CEBPB	chr7:150262392-150262657	IMR90	lung:	n/a	chr7:150262534-150262545
5	CEBPB	chr7:150262381-150262701	H1-hESC	embryonic stem cell:	n/a	chr7:150262534-150262545

Variant related genes	Relation type
GIMAP4	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10952264	1.00[ASN][1000 genomes]
rs11979529	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11980799	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1317277	1.00[ASN][1000 genomes]
rs2293173	1.00[ASN][1000 genomes]
rs59289349	0.81[ASN][1000 genomes]
rs6464084	1.00[ASN][1000 genomes]
rs6949346	1.00[ASN][1000 genomes]
rs6959617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463344	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73480194	0.84[ASN][1000 genomes]
rs73727313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810366	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3341786	chr7:150220353-150269134	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150259000-150262600	Enhancers	HUVEC	blood vessel
2	chr7:150259800-150262600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr7:150259800-150263000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:150260400-150262600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:150260400-150262800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr7:150260400-150264600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:150260600-150262800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:150260800-150263200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:150260800-150264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:150260800-150265000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:150261200-150262400	Enhancers	Fetal Brain Female	brain
12	chr7:150261200-150262600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:150261400-150262400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:150261600-150263000	Enhancers	Primary T cells from cord blood	blood
15	chr7:150261600-150263200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:150261600-150263600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr7:150261600-150263800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:150261800-150262600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr7:150261800-150263600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:150261800-150263800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:150261800-150263800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:150262000-150262400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:150262000-150262400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr7:150262000-150262600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:150262000-150262600	Enhancers	Fetal Brain Male	brain
26	chr7:150262000-150263000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:150262000-150264400	Weak transcription	Fetal Stomach	stomach
28	chr7:150262000-150265000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:150262200-150262600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:150262200-150263600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr7:150262200-150263600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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