Variant report

Variant	rs73472244
Chromosome Location	chr7:147800545-147800546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58508842	1.00[AMR][1000 genomes]
rs61428821	1.00[AMR][1000 genomes]
rs73466116	1.00[AMR][1000 genomes]
rs73468148	1.00[AMR][1000 genomes]
rs73468151	1.00[AMR][1000 genomes]
rs73470231	1.00[AMR][1000 genomes]
rs73470277	1.00[AMR][1000 genomes]
rs73470286	1.00[AMR][1000 genomes]
rs73472234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472242	0.94[AFR][1000 genomes]
rs73472288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1813148	chr7:147796154-147837213	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147792600-147801400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147800000-147801400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:147800400-147800600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr7:147800400-147801400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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