Variant report

Variant	rs73472384
Chromosome Location	chr7:150006761-150006762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10236662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237116	1.00[AMR][1000 genomes]
rs10252405	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13229284	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13243816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57982114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58154968	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472377	1.00[AMR][1000 genomes]
rs73472378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472380	1.00[AMR][1000 genomes]
rs73472382	1.00[AMR][1000 genomes]
rs7798216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889435	chr7:149585379-150013393	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv981608	chr7:150002640-150009746	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv508490	chr7:150006068-150051241	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149984200-150012400	Weak transcription	Liver	Liver
2	chr7:149984200-150019400	Weak transcription	Colonic Mucosa	Colon
3	chr7:149992400-150018000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:150002600-150007200	Weak transcription	Pancreas	Pancrea
5	chr7:150003800-150016000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:150004000-150019000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:150005200-150010000	Weak transcription	HepG2	liver
8	chr7:150006600-150007000	Weak transcription	Hela-S3	cervix
9	chr7:150006600-150007000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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