Variant report

Variant	rs73472727
Chromosome Location	chr7:140032267-140032268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:70591550..70593050-chr7:140030644..140032574,2	K562	blood:
2	chr7:139875309..139878059-chr7:140031585..140033798,3	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58258857	1.00[AFR][1000 genomes]
rs60724192	0.94[AFR][1000 genomes]
rs73472765	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140016200-140034000	Weak transcription	Pancreas	Pancrea
2	chr7:140016800-140034200	Weak transcription	Small Intestine	intestine
3	chr7:140017000-140033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:140017200-140032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:140017600-140033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:140017600-140034000	Weak transcription	HMEC	breast
7	chr7:140023800-140033800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:140026000-140033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:140026000-140033800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:140026000-140034400	Weak transcription	Gastric	stomach
12	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:140026200-140032800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:140026200-140032800	Weak transcription	Esophagus	oesophagus
16	chr7:140026200-140033000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:140026200-140033200	Weak transcription	Primary B cells from cord blood	blood
18	chr7:140026200-140033200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr7:140026200-140033200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:140026200-140033200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:140026200-140033200	Weak transcription	Fetal Intestine Large	intestine
22	chr7:140026200-140033200	Weak transcription	HSMMtube	muscle
23	chr7:140026200-140033400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:140026200-140033400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:140026200-140033400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:140026200-140033600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:140026200-140033800	Weak transcription	Placenta	Placenta
28	chr7:140026200-140034000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:140026200-140034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:140026200-140034000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:140026200-140034000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:140026200-140034000	Weak transcription	Fetal Kidney	kidney
33	chr7:140026200-140034000	Weak transcription	Right Ventricle	heart
34	chr7:140026200-140034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:140026200-140034000	Weak transcription	Spleen	Spleen
36	chr7:140026200-140034000	Weak transcription	Dnd41	blood
37	chr7:140026200-140034000	Weak transcription	NHLF	lung
38	chr7:140026200-140034200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:140026200-140034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:140026200-140034400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:140026200-140034400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:140026200-140034400	Weak transcription	Hela-S3	cervix
43	chr7:140026200-140034600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:140026400-140032800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:140026400-140033000	Weak transcription	Right Atrium	heart
48	chr7:140026400-140033400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:140026400-140033400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:140026400-140033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links