Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:139875411..139876947-chr7:139936312..139938138,2	K562	blood:
2	chr7:139936351..139938493-chr7:139942116..139943867,2	MCF-7	breast:
3	chr7:139929780..139933692-chr7:139937205..139940372,4	MCF-7	breast:
4	chr7:139875461..139878038-chr7:139936188..139938892,3	MCF-7	breast:
5	chr7:139925254..139928036-chr7:139936221..139938355,2	K562	blood:
6	chr7:139936676..139938301-chr7:139945159..139946778,2	MCF-7	breast:
7	chr7:139933047..139936198-chr7:139937041..139939566,3	MCF-7	breast:
8	chr7:139875411..139877596-chr7:139936057..139937812,2	K562	blood:
9	chr7:139936660..139939760-chr7:139940053..139943342,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12672589	0.81[EUR][1000 genomes]
rs58263911	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58599202	0.82[EUR][1000 genomes]
rs61580118	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6464620	0.82[EUR][1000 genomes]
rs6944218	0.82[EUR][1000 genomes]
rs6944258	0.82[EUR][1000 genomes]
rs73473571	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73473582	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73473584	0.82[EUR][1000 genomes]
rs7787388	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7788443	0.82[ASN][1000 genomes]
rs7799803	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139931600-139941000	Weak transcription	Small Intestine	intestine
2	chr7:139931800-139942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:139932200-139938400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:139932200-139939600	Weak transcription	Left Ventricle	heart
5	chr7:139933800-139941400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:139934000-139937800	Weak transcription	HepG2	liver
7	chr7:139934000-139939200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:139934000-139941600	Weak transcription	Primary B cells from cord blood	blood
9	chr7:139934400-139939000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr7:139935400-139938400	Enhancers	Duodenum Mucosa	Duodenum
11	chr7:139935400-139938400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:139935800-139938600	Enhancers	Colonic Mucosa	Colon
13	chr7:139936600-139937800	Weak transcription	Fetal Intestine Large	intestine
14	chr7:139936800-139937800	Weak transcription	Fetal Intestine Small	intestine
15	chr7:139936800-139939200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:139936800-139942600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr7:139937000-139937800	Weak transcription	Stomach Mucosa	stomach
18	chr7:139937000-139938600	Weak transcription	K562	blood
19	chr7:139937000-139938800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr7:139937200-139942000	Weak transcription	Spleen	Spleen

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