Variant report

Variant	rs73474229
Chromosome Location	chr6:79379772-79379773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16890218	1.00[EUR][1000 genomes]
rs55991415	1.00[EUR][1000 genomes]
rs73472278	1.00[EUR][1000 genomes]
rs73474230	1.00[EUR][1000 genomes]
rs73474234	1.00[EUR][1000 genomes]
rs73474280	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79379000-79380800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:79379200-79380600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:79379200-79380800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:79379200-79380800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:79379200-79381400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:79379400-79380200	Enhancers	Brain Germinal Matrix	brain
7	chr6:79379400-79380800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:79379600-79380800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links