Variant report

Variant	rs73474456
Chromosome Location	chr6:82727250-82727251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16893799	0.81[AFR][1000 genomes]
rs59219161	0.81[AFR][1000 genomes]
rs945856	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020783	chr6:82720632-82732325	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82721600-82727600	Enhancers	HUVEC	blood vessel
2	chr6:82722400-82728200	Enhancers	Hela-S3	cervix
3	chr6:82722800-82727600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:82722800-82728000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:82723000-82727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:82723000-82728400	Enhancers	HMEC	breast
7	chr6:82723600-82727800	Enhancers	HSMM	muscle
8	chr6:82724000-82728000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82724200-82727800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:82725000-82727400	Enhancers	HepG2	liver
11	chr6:82725000-82728200	Weak transcription	Psoas Muscle	Psoas
12	chr6:82725200-82731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:82725400-82728200	Enhancers	NHDF-Ad	bronchial
14	chr6:82725400-82731800	Weak transcription	NH-A	brain
15	chr6:82725600-82727800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:82725600-82728400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:82725600-82728600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:82726000-82727400	Enhancers	Ovary	ovary
19	chr6:82726000-82727600	Enhancers	Right Atrium	heart
20	chr6:82726000-82728200	Enhancers	Fetal Intestine Large	intestine
21	chr6:82726000-82728400	Enhancers	Adipose Nuclei	Adipose
22	chr6:82726200-82727800	Enhancers	NHEK	skin
23	chr6:82726200-82728000	Enhancers	Colon Smooth Muscle	Colon
24	chr6:82726200-82728200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:82726200-82728400	Enhancers	Osteobl	bone
26	chr6:82726400-82727400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr6:82726400-82727800	Enhancers	HSMMtube	muscle
28	chr6:82726600-82727600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:82726800-82727400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:82726800-82727400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:82726800-82727600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:82726800-82727600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:82726800-82727800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:82726800-82727800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:82726800-82727800	Enhancers	Fetal Intestine Small	intestine
36	chr6:82726800-82727800	Enhancers	Placenta	Placenta
37	chr6:82726800-82728000	Enhancers	NHLF	lung
38	chr6:82727000-82727400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:82727000-82727400	Enhancers	A549	lung
40	chr6:82727000-82728400	Enhancers	Aorta	Aorta
41	chr6:82727200-82727400	Enhancers	Left Ventricle	heart
42	chr6:82727200-82727800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:82727200-82731600	Weak transcription	Fetal Heart	heart
44	chr6:82727200-82732200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:82727200-82732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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