Variant report

Variant	rs73474497
Chromosome Location	chr6:82750533-82750534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82750012..82750752-chr6:82887553..82888336,3	MCF-7	breast:
2	chr6:82689854..82690591-chr6:82750428..82751055,2	MCF-7	breast:
3	chr6:82461410..82463529-chr6:82749254..82751219,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16893768	1.00[AMR][1000 genomes]
rs16893799	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59219161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474500	0.83[AFR][1000 genomes]
rs945856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82744200-82753400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:82749800-82751200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82750000-82750600	Enhancers	Ovary	ovary
4	chr6:82750000-82750600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:82750000-82750600	Enhancers	Right Ventricle	heart
6	chr6:82750000-82750800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:82750000-82750800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:82750000-82750800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82750000-82750800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:82750000-82750800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:82750000-82750800	Enhancers	Brain Substantia Nigra	brain
12	chr6:82750000-82751000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:82750000-82751000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:82750000-82751000	Enhancers	Fetal Heart	heart
15	chr6:82750000-82751000	Enhancers	HUVEC	blood vessel
16	chr6:82750000-82751000	Enhancers	NHDF-Ad	bronchial
17	chr6:82750200-82750800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:82750200-82750800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:82750200-82751400	Enhancers	HepG2	liver
20	chr6:82750400-82750800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:82750400-82751600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links