Variant report

Variant	rs73476552
Chromosome Location	chr7:150358737-150358738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150345053..150347622-chr7:150357976..150360904,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11973417	0.97[EUR][1000 genomes]
rs11983348	0.97[EUR][1000 genomes]
rs11983413	0.97[EUR][1000 genomes]
rs12671822	0.91[EUR][1000 genomes]
rs2080052	0.96[EUR][1000 genomes]
rs2098221	0.96[EUR][1000 genomes]
rs28736331	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4725355	0.96[EUR][1000 genomes]
rs4725358	0.92[EUR][1000 genomes]
rs58288826	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274837	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60774275	0.97[EUR][1000 genomes]
rs60958118	0.96[EUR][1000 genomes]
rs61199880	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960820	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474878	0.97[EUR][1000 genomes]
rs73474880	0.97[EUR][1000 genomes]
rs73476554	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73476564	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150354800-150362000	Weak transcription	Right Atrium	heart
2	chr7:150355800-150360800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr7:150357600-150365000	Enhancers	Primary T cells from cord blood	blood
4	chr7:150358000-150360800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr7:150358000-150360800	Enhancers	Dnd41	blood
6	chr7:150358000-150365400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150358000-150369000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:150358200-150358800	Flanking Active TSS	GM12878-XiMat	blood
9	chr7:150358200-150360800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:150358200-150360800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:150358200-150360800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:150358200-150360800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:150358200-150360800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:150358200-150360800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:150358400-150358800	Enhancers	Fetal Thymus	thymus
16	chr7:150358400-150359400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:150358400-150360800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:150358600-150358800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:150358600-150358800	Enhancers	Lung	lung
20	chr7:150358600-150359400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr7:150358600-150365600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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