Variant report

Variant	rs73477376
Chromosome Location	chr7:116738024-116738025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr7:116737955-116738187	HepG2	liver:	n/a	chr7:116738073-116738084 chr7:116738074-116738083
2	HNF4A	chr7:116737977-116738147	HepG2	liver:	n/a	n/a
3	NR2F2	chr7:116737981-116738466	HepG2	liver:	n/a	n/a
4	ELF1	chr7:116737958-116738249	HepG2	liver:	n/a	chr7:116738073-116738084 chr7:116738074-116738083
5	FOSL2	chr7:116737962-116738228	HepG2	liver:	n/a	n/a
6	FOXA1	chr7:116737951-116738404	HepG2	liver:	n/a	n/a
7	MYBL2	chr7:116737926-116738374	HepG2	liver:	n/a	n/a
8	FOXA1	chr7:116737975-116738361	HepG2	liver:	n/a	n/a
9	FOXA1	chr7:116738000-116738232	T-47D	breast:	n/a	n/a
10	FOXA2	chr7:116737838-116738488	HepG2	liver:	n/a	n/a
11	NFIC	chr7:116737969-116738352	HepG2	liver:	n/a	n/a
12	FOXA1	chr7:116737978-116738250	T-47D	breast:	n/a	n/a
13	CEBPB	chr7:116737993-116738251	HepG2	liver:	n/a	n/a
14	FOXA1	chr7:116737964-116738334	HepG2	liver:	n/a	n/a
15	EP300	chr7:116737978-116738341	HepG2	liver:	n/a	chr7:116738076-116738083
16	FOXA1	chr7:116737967-116738350	HepG2	liver:	n/a	n/a
17	FOXA2	chr7:116737971-116738333	HepG2	liver:	n/a	n/a
18	NR2F2	chr7:116737940-116738416	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	7:116728195-116740907..7:117341506-117356953	Hela-S3	cervix:
2	7:116580605-116585719..7:116728195-116740907	GM12878	blood:
3	chr7:116731419..116733598-chr7:116734784..116738104,4	K562	blood:
4	chr7:116658121..116660442-chr7:116737370..116739171,2	K562	blood:
5	chr7:116731236..116733598-chr7:116735179..116739600,3	K562	blood:

Variant related genes	Relation type
ST7	TF binding region
ENSG00000222150	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000004866	Chromatin interaction

rs_ID	r²[population]
rs73477386	1.00[AFR][1000 genomes]
rs7809908	0.82[AFR][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116717200-116744400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:116724200-116744200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:116724400-116750400	Weak transcription	Fetal Lung	lung
4	chr7:116725400-116766400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:116728200-116738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116728200-116738200	Weak transcription	Spleen	Spleen
7	chr7:116728200-116741000	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:116728200-116750600	Weak transcription	Small Intestine	intestine
9	chr7:116730600-116738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:116730600-116738200	Weak transcription	Brain Anterior Caudate	brain
11	chr7:116731000-116738400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:116731200-116738200	Weak transcription	Esophagus	oesophagus
13	chr7:116731400-116749000	Weak transcription	Fetal Brain Female	brain
14	chr7:116731800-116740800	Weak transcription	GM12878-XiMat	blood
15	chr7:116732000-116738200	Weak transcription	Gastric	stomach
16	chr7:116732200-116750400	Weak transcription	Fetal Intestine Small	intestine
17	chr7:116732400-116738200	Weak transcription	Left Ventricle	heart
18	chr7:116733000-116738200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:116733000-116741000	Weak transcription	K562	blood
20	chr7:116734800-116744000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:116734800-116750400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:116735400-116738200	Weak transcription	Right Atrium	heart
23	chr7:116735400-116750400	Weak transcription	Psoas Muscle	Psoas
24	chr7:116736800-116741600	Weak transcription	Brain Substantia Nigra	brain
25	chr7:116736800-116741800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:116736800-116742200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:116736800-116749000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:116737000-116749800	Weak transcription	Fetal Heart	heart
29	chr7:116737000-116750600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:116737400-116741000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:116737400-116758800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:116737600-116738600	Enhancers	HepG2	liver
33	chr7:116738000-116738400	Enhancers	Aorta	Aorta
34	chr7:116738000-116738400	Enhancers	Liver	Liver
35	chr7:116738000-116738400	Enhancers	Ovary	ovary
36	chr7:116738000-116738400	Enhancers	Pancreas	Pancrea
37	chr7:116738000-116738400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr7:116738000-116738600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr7:116738000-116738600	Enhancers	Right Ventricle	heart
40	chr7:116738000-116738600	Enhancers	HSMM	muscle
41	chr7:116738000-116738800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr7:116738000-116738800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:116738000-116738800	Enhancers	Stomach Mucosa	stomach
44	chr7:116738000-116738800	Enhancers	HMEC	breast
45	chr7:116738000-116738800	Enhancers	HSMMtube	muscle
46	chr7:116738000-116738800	Enhancers	NHEK	skin
47	chr7:116738000-116739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:116738000-116739200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:116738000-116739200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:116738000-116739200	Enhancers	NHDF-Ad	bronchial

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