Variant report

Variant	rs73477639
Chromosome Location	chr15:79143944-79143945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79135320..79138414-chr15:79142742..79145472,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73470361	0.91[AFR][1000 genomes]
rs73470362	0.91[AFR][1000 genomes]
rs73470376	0.91[AFR][1000 genomes]
rs73470383	0.88[AFR][1000 genomes]
rs73477609	0.84[AFR][1000 genomes]
rs73477618	0.87[AFR][1000 genomes]
rs73477678	0.93[AFR][1000 genomes]
rs9972475	0.98[AFR][1000 genomes]
rs9989289	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79142800-79144000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:79142800-79144000	Enhancers	Brain Angular Gyrus	brain
4	chr15:79142800-79144000	Enhancers	Fetal Stomach	stomach
5	chr15:79143000-79144000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:79143000-79144000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:79143000-79144000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:79143000-79144400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:79143000-79144600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:79143200-79144000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:79143200-79144000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:79143200-79144000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:79143800-79144000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:79143800-79144000	Enhancers	Brain Cingulate Gyrus	brain
15	chr15:79143800-79144000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:79143800-79144200	Enhancers	HepG2	liver
17	chr15:79143800-79145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:79143800-79146800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:79143800-79147000	Weak transcription	Brain Anterior Caudate	brain
20	chr15:79143800-79152200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:79143800-79152200	Weak transcription	Brain Substantia Nigra	brain
22	chr15:79143800-79152200	Weak transcription	Fetal Lung	lung

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