Variant report

Variant	rs73481389
Chromosome Location	chr13:49872310-49872311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:49870136..49872971-chr13:49876994..49878672,2	MCF-7	breast:
2	chr13:49870307..49873739-chr13:49874898..49876503,3	K562	blood:
3	chr13:49871430..49873308-chr13:49873892..49876878,2	MCF-7	breast:
4	chr13:49865941..49868717-chr13:49870815..49873076,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDADC1-1	chr13:49870641-49873461	NONHSAT033739

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73485422	1.00[AMR][1000 genomes]
rs73485426	1.00[AMR][1000 genomes]
rs73496222	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900069	chr13:49815405-49976393	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49826600-49877800	Weak transcription	Psoas Muscle	Psoas
2	chr13:49834200-49875200	Weak transcription	Gastric	stomach
3	chr13:49834800-49873000	Weak transcription	HMEC	breast
4	chr13:49834800-49875400	Weak transcription	Esophagus	oesophagus
5	chr13:49835800-49875200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr13:49835800-49875200	Weak transcription	GM12878-XiMat	blood
7	chr13:49838600-49875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:49842600-49874600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:49842800-49875200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:49842800-49875400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr13:49842800-49875400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr13:49848000-49873800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr13:49853800-49875400	Weak transcription	Primary T cells from cord blood	blood
14	chr13:49853800-49875400	Weak transcription	Fetal Intestine Large	intestine
15	chr13:49854000-49875000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr13:49854000-49875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr13:49854000-49875200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:49854000-49877600	Weak transcription	Left Ventricle	heart
19	chr13:49854000-49883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:49855000-49875200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:49857200-49875200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr13:49862000-49875400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:49862000-49875600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr13:49863200-49875000	Weak transcription	Dnd41	blood
25	chr13:49867200-49872400	Weak transcription	Brain Substantia Nigra	brain
26	chr13:49867200-49872600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr13:49867200-49874600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:49867200-49874600	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:49867200-49875200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:49867200-49875200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr13:49867200-49875200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr13:49867200-49875200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr13:49867200-49875200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:49867200-49876800	Weak transcription	Thymus	Thymus
35	chr13:49867200-49884200	Weak transcription	Fetal Brain Female	brain
36	chr13:49867400-49872400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr13:49867400-49872800	Weak transcription	Brain Angular Gyrus	brain
38	chr13:49867400-49874600	Weak transcription	Adipose Nuclei	Adipose
39	chr13:49867400-49875200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr13:49867400-49875200	Weak transcription	Brain Germinal Matrix	brain
41	chr13:49867400-49875200	Weak transcription	Osteobl	bone
42	chr13:49867400-49875600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr13:49867600-49872800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:49867600-49872800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:49867600-49875400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr13:49867800-49874800	Weak transcription	Fetal Thymus	thymus
47	chr13:49867800-49875200	Weak transcription	NHLF	lung
48	chr13:49867800-49875400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr13:49868000-49875400	Weak transcription	Primary B cells from cord blood	blood
50	chr13:49868400-49873000	Weak transcription	Fetal Lung	lung

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