Variant report

Variant	rs73482214
Chromosome Location	chr6:71295642-71295643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71287440..71290712-chr6:71292784..71295822,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs4084006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57211713	1.00[AFR][1000 genomes]
rs57247959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57627989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58125338	1.00[AMR][1000 genomes]
rs58605827	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60954115	1.00[AFR][1000 genomes]
rs73472767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472786	1.00[AMR][1000 genomes]
rs73472788	1.00[AMR][1000 genomes]
rs73472800	1.00[AMR][1000 genomes]
rs73474931	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474964	1.00[AMR][1000 genomes]
rs73474983	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476884	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478818	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482575	0.82[AFR][1000 genomes]
rs73485119	0.82[AFR][1000 genomes]
rs73485122	0.82[AFR][1000 genomes]
rs73485130	0.82[AFR][1000 genomes]
rs73485141	1.00[AFR][1000 genomes]
rs73485161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71277200-71296800	Weak transcription	Pancreas	Pancrea
2	chr6:71277200-71300200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:71277200-71303200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:71277200-71310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:71277400-71299000	Weak transcription	NHDF-Ad	bronchial
6	chr6:71277400-71300600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:71277400-71301800	Weak transcription	HSMMtube	muscle
8	chr6:71277400-71302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:71277400-71302200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:71277400-71302800	Weak transcription	Thymus	Thymus
11	chr6:71277800-71301800	Weak transcription	HepG2	liver
12	chr6:71277800-71301800	Weak transcription	NHEK	skin
13	chr6:71278000-71305200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:71278200-71308800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:71278400-71300800	Weak transcription	Fetal Kidney	kidney
16	chr6:71278600-71308800	Weak transcription	Dnd41	blood
17	chr6:71278800-71298200	Weak transcription	K562	blood
18	chr6:71281800-71298400	Weak transcription	NHLF	lung
19	chr6:71286000-71297400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:71286000-71303200	Weak transcription	Psoas Muscle	Psoas
21	chr6:71286000-71304800	Weak transcription	Gastric	stomach
22	chr6:71286200-71310600	Weak transcription	Right Ventricle	heart
23	chr6:71286800-71301600	Weak transcription	Lung	lung
24	chr6:71287400-71296600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:71288400-71301600	Weak transcription	Fetal Heart	heart
26	chr6:71288400-71309800	Weak transcription	Spleen	Spleen
27	chr6:71288600-71298000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:71288800-71296400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:71288800-71300600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:71289000-71296000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:71289000-71296200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:71289000-71301000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:71289200-71295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:71289200-71296000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:71289200-71296400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr6:71289200-71296400	Strong transcription	Ovary	ovary
37	chr6:71289200-71298000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:71289200-71298400	Strong transcription	Placenta	Placenta
39	chr6:71289200-71300800	Strong transcription	Adipose Nuclei	Adipose
40	chr6:71289200-71301800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:71289400-71295800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:71289400-71302600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:71289600-71295800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:71289600-71300200	Weak transcription	Stomach Mucosa	stomach
45	chr6:71289800-71295800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:71289800-71296200	Strong transcription	Primary T cells from cord blood	blood
47	chr6:71289800-71296200	Strong transcription	Fetal Intestine Large	intestine
48	chr6:71289800-71298000	Strong transcription	Liver	Liver
49	chr6:71289800-71310200	Weak transcription	Colonic Mucosa	Colon
50	chr6:71290000-71296000	Strong transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links