Variant report

Variant	rs73484095
Chromosome Location	chr11:64156862-64156863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64134872..64137254-chr11:64155587..64157276,2	MCF-7	breast:
2	chr11:64154972..64157726-chr11:64176827..64179466,2	MCF-7	breast:
3	chr11:64155222..64158221-chr11:64163134..64164663,2	MCF-7	breast:
4	chr11:64155701..64157878-chr11:64200907..64203844,2	K562	blood:
5	chr11:64126652..64130402-chr11:64156162..64161731,4	K562	blood:
6	chr11:64155411..64157324-chr11:64162731..64166213,3	MCF-7	breast:
7	chr11:64151479..64154106-chr11:64156767..64158653,2	K562	blood:

Variant related genes	Relation type
ENSG00000221273	Chromatin interaction
ENSG00000231680	Chromatin interaction
ENSG00000162302	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58013272	1.00[AMR][1000 genomes]
rs73484100	1.00[AFR][1000 genomes]
rs73486193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
2	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64134400-64158400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:64141200-64162000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:64147800-64162200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:64150600-64163000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:64153600-64158200	Weak transcription	Spleen	Spleen
6	chr11:64153600-64158800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:64153600-64159000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:64153800-64159000	Weak transcription	Right Ventricle	heart
9	chr11:64153800-64163200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:64154000-64158200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:64154000-64167600	Weak transcription	Right Atrium	heart
12	chr11:64154200-64158000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:64154200-64158200	Weak transcription	Primary B cells from cord blood	blood
14	chr11:64154200-64158200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:64154600-64158200	Weak transcription	Primary T cells from cord blood	blood
16	chr11:64154600-64158200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:64154800-64158200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:64154800-64158200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:64155600-64157600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:64156000-64161600	Weak transcription	Fetal Thymus	thymus
21	chr11:64156400-64157000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:64156400-64157200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:64156800-64157200	Enhancers	Fetal Brain Male	brain
24	chr11:64156800-64157200	Enhancers	Fetal Kidney	kidney

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