Variant report

Variant	rs73485539
Chromosome Location	chr6:70436720-70436721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70435929..70438657-chr6:70440659..70443018,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61267713	1.00[AMR][1000 genomes]
rs6934513	1.00[AMR][1000 genomes]
rs73478060	1.00[AMR][1000 genomes]
rs73478063	1.00[AMR][1000 genomes]
rs73478064	1.00[AMR][1000 genomes]
rs73478065	1.00[AMR][1000 genomes]
rs73478068	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv999346	chr6:70428857-70442646	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:70380800-70467800	Weak transcription	K562	blood
3	chr6:70397800-70439000	Weak transcription	Fetal Heart	heart
4	chr6:70404200-70447400	Weak transcription	Hela-S3	cervix
5	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:70405600-70446400	Weak transcription	HepG2	liver
7	chr6:70406200-70438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:70406600-70449400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:70406600-70457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:70417400-70455600	Weak transcription	Fetal Kidney	kidney
11	chr6:70418600-70455800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:70423200-70443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:70424400-70441800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:70426200-70455800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:70429000-70444400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:70429000-70446000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:70429000-70455600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:70429000-70462400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:70429000-70467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:70429200-70442800	Weak transcription	GM12878-XiMat	blood
21	chr6:70431400-70498600	Weak transcription	Ovary	ovary
22	chr6:70431600-70456000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:70431800-70447000	Weak transcription	Placenta	Placenta
24	chr6:70431800-70450000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr6:70431800-70455800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:70431800-70456200	Weak transcription	Thymus	Thymus
27	chr6:70432000-70445000	Weak transcription	Lung	lung
28	chr6:70432000-70445800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:70432000-70447800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:70432000-70447800	Weak transcription	Fetal Thymus	thymus
31	chr6:70432000-70455600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:70432000-70455800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:70432000-70455800	Weak transcription	Fetal Intestine Small	intestine
34	chr6:70432000-70456000	Weak transcription	Esophagus	oesophagus
35	chr6:70432000-70456200	Weak transcription	Aorta	Aorta
36	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:70432000-70470400	Weak transcription	Gastric	stomach
39	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
40	chr6:70432200-70444000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:70432200-70444800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:70432200-70445800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:70432200-70446800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:70432200-70447000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:70432200-70450200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:70432600-70437000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:70432600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:70432800-70445600	Weak transcription	Dnd41	blood
50	chr6:70432800-70446000	Weak transcription	Primary monocytes fromperipheralblood	blood

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