Variant report

Variant	rs73486447
Chromosome Location	chr6:48734411-48734412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73477800	0.83[AFR][1000 genomes]
rs73486407	0.85[AFR][1000 genomes]
rs73486418	1.00[AFR][1000 genomes]
rs73486424	1.00[AFR][1000 genomes]
rs73486426	1.00[AFR][1000 genomes]
rs73486461	1.00[AFR][1000 genomes]
rs73486465	1.00[AFR][1000 genomes]
rs73486468	1.00[AFR][1000 genomes]
rs73486472	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48731400-48735800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:48732000-48734800	Enhancers	NHEK	skin
3	chr6:48732000-48735000	Enhancers	NHLF	lung
4	chr6:48732200-48734800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:48732400-48734800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:48732800-48734800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:48732800-48735000	Enhancers	HMEC	breast
8	chr6:48733000-48735600	Weak transcription	Fetal Brain Male	brain
9	chr6:48733200-48734800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:48733200-48734800	Enhancers	A549	lung
11	chr6:48733400-48734800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:48733400-48734800	Enhancers	Osteobl	bone
13	chr6:48733400-48735000	Enhancers	NHDF-Ad	bronchial
14	chr6:48733600-48734800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:48733800-48734800	Weak transcription	Stomach Mucosa	stomach
16	chr6:48734000-48734600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:48734400-48742800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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