Variant report

Variant	rs73487510
Chromosome Location	chr7:129413173-129413174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129405931..129408629-chr7:129412296..129413845,2	MCF-7	breast:
2	chr7:129398154..129400478-chr7:129410669..129413276,2	MCF-7	breast:
3	chr7:129411901..129413453-chr7:129449425..129451785,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73472424	1.00[AMR][1000 genomes]
rs73487553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813824	chr7:129379450-129424461	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
2	esv14232	chr7:129379923-129445465	Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
3	nsv516024	chr7:129387380-129444951	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
4	esv1817678	chr7:129394447-129424461	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
5	nsv464721	chr7:129397644-129444951	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
6	nsv608420	chr7:129397644-129444951	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
7	esv1808977	chr7:129402158-129424461	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
8	esv1828133	chr7:129403541-129437113	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
9	esv1843969	chr7:129403541-129446598	Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
10	esv1802311	chr7:129406936-129442389	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129381800-129415600	Weak transcription	Pancreas	Pancrea
2	chr7:129396000-129413600	Weak transcription	A549	lung
3	chr7:129396600-129416600	Weak transcription	Esophagus	oesophagus
4	chr7:129397000-129417200	Weak transcription	Hela-S3	cervix
5	chr7:129402800-129417800	Weak transcription	Gastric	stomach
6	chr7:129404800-129415800	Weak transcription	NHEK	skin
7	chr7:129409600-129418200	Weak transcription	Right Atrium	heart
8	chr7:129410600-129413600	Enhancers	Primary B cells from peripheral blood	blood
9	chr7:129410600-129417000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:129410800-129413800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:129410800-129415400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr7:129411000-129416600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:129411200-129413200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr7:129411200-129413400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:129411200-129413800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:129411200-129415600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr7:129411400-129413400	Weak transcription	K562	blood
18	chr7:129411400-129415600	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr7:129411400-129418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:129412200-129413600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:129412200-129414600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:129412400-129413400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:129412400-129413400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:129412400-129413400	Enhancers	Placenta	Placenta
25	chr7:129412800-129413200	Enhancers	HSMM	muscle
26	chr7:129412800-129414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:129412800-129415800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
28	chr7:129413000-129413200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr7:129413000-129413600	Enhancers	HSMMtube	muscle
30	chr7:129413000-129414400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:129413000-129415400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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