Variant report

Variant	rs73488256
Chromosome Location	chr11:64229473-64229474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:64226475-64233213..11:64415880-64426617	GM12878	blood:
2	chr11:64222643..64224978-chr11:64227732..64230780,4	K562	blood:
3	11:64226475-64233213..11:64489786-64499245	GM12878	blood:
4	chr11:64228282..64230245-chr11:64239677..64241181,2	K562	blood:
5	11:64226475-64233213..11:64402707-64415880	GM12878	blood:
6	11:64226475-64233213..11:64530985-64535815	Hela-S3	cervix:
7	11:64226475-64233213..11:64544826-64559210	GM12878	blood:
8	11:64226475-64233213..11:64519906-64523887	Hela-S3	cervix:
9	11:64226475-64233213..11:64517861-64519906	GM12878	blood:
10	11:64226475-64233213..11:64356433-64395036	Hela-S3	cervix:
11	11:64226475-64233213..11:64538326-64543055	GM12878	blood:
12	11:64226475-64233213..11:64523887-64530985	GM12878	blood:
13	11:64226475-64233213..11:64501239-64517861	GM12878	blood:
14	11:64226475-64233213..11:64426650-64437729	GM12878	blood:
15	chr11:64222007..64224797-chr11:64227517..64230643,3	K562	blood:
16	11:64226475-64233213..11:64322633-64349180	GM12878	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000168066	Chromatin interaction
ENSG00000168065	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000269290	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000068976	Chromatin interaction
ENSG00000197891	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000237410	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1198936	1.00[EUR][1000 genomes]
rs476908	1.00[EUR][1000 genomes]
rs500273	1.00[EUR][1000 genomes]
rs57843299	0.81[AFR][1000 genomes]
rs605597	1.00[EUR][1000 genomes]
rs61695865	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64225800-64235600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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