Variant report

Variant	rs73488456
Chromosome Location	chr9:101282838-101282839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16916497	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101282400-101283800	Enhancers	NH-A	brain
2	chr9:101282400-101284000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101282400-101286000	Enhancers	HUVEC	blood vessel
4	chr9:101282600-101283800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:101282600-101284000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101282600-101284200	Enhancers	Osteobl	bone
7	chr9:101282800-101283000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:101282800-101283000	Enhancers	Fetal Brain Male	brain
9	chr9:101282800-101284000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:101282800-101284000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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