Variant report

Variant	rs73489009
Chromosome Location	chr13:49134142-49134143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73486897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49132200-49135000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr13:49132200-49135000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:49133200-49134800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:49133400-49135600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:49133600-49134200	Enhancers	HSMM	muscle
6	chr13:49133600-49134600	Enhancers	K562	blood
7	chr13:49133600-49134600	Enhancers	Osteobl	bone
8	chr13:49133600-49135000	Enhancers	Dnd41	blood
9	chr13:49133600-49135000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr13:49133600-49136000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr13:49133800-49134400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:49133800-49134400	Enhancers	HMEC	breast
13	chr13:49133800-49134600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:49133800-49134600	Enhancers	NH-A	brain
15	chr13:49133800-49135800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr13:49134000-49134200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:49134000-49135600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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