Variant report

Variant	rs73489115
Chromosome Location	chr9:26012877-26012878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10114070	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10114317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10114362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120172	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10120179	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10120408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120455	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121634	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10481569	1.00[EUR][1000 genomes]
rs10967158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967159	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967160	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967164	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10967172	1.00[EUR][1000 genomes]
rs12341293	1.00[EUR][1000 genomes]
rs12343318	1.00[EUR][1000 genomes]
rs12343321	1.00[EUR][1000 genomes]
rs12347536	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12352413	1.00[EUR][1000 genomes]
rs1412448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520591	1.00[ASN][1000 genomes]
rs57471033	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58009568	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58023057	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58706057	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60167519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60695088	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61191499	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs651556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022838	1.00[EUR][1000 genomes]
rs7035497	1.00[EUR][1000 genomes]
rs7040093	1.00[EUR][1000 genomes]
rs73472907	1.00[EUR][1000 genomes]
rs73472909	1.00[EUR][1000 genomes]
rs73472911	1.00[EUR][1000 genomes]
rs73489113	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73489158	1.00[EUR][1000 genomes]
rs73489164	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7847049	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7847313	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7861398	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7873322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7873597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7873620	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7873714	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs836078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892839	chr9:25750661-26050209	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892840	chr9:25867219-26034314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv613921	chr9:25952529-26028352	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892842	chr9:25954098-26102954	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613922	chr9:26005487-26028352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv466324	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613923	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv613924	chr9:26009632-26037974	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26012600-26013400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:26012800-26013400	Enhancers	Hela-S3	cervix
3	chr9:26012800-26013600	Enhancers	NHDF-Ad	bronchial
4	chr9:26012800-26013800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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