Variant report

Variant	rs73490089
Chromosome Location	chr13:51270910-51270911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11839057	0.89[ASN][1000 genomes]
rs2540523	0.81[ASN][1000 genomes]
rs2706236	0.90[ASN][1000 genomes]
rs2794464	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51265200-51275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:51266000-51271800	Weak transcription	Primary T cells from cord blood	blood
3	chr13:51266000-51274600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51266400-51271600	Weak transcription	Right Ventricle	heart
5	chr13:51266400-51272200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:51268200-51271400	Weak transcription	HUVEC	blood vessel
7	chr13:51268200-51271600	Weak transcription	Lung	lung
8	chr13:51268200-51272400	Weak transcription	Fetal Stomach	stomach
9	chr13:51268200-51272400	Weak transcription	Right Atrium	heart
10	chr13:51268200-51274800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:51268400-51271600	Weak transcription	Brain Anterior Caudate	brain
12	chr13:51268400-51271600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:51268400-51272600	Weak transcription	Stomach Mucosa	stomach
14	chr13:51268400-51274200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:51268400-51277200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:51268600-51271200	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:51268600-51271400	Weak transcription	Adipose Nuclei	Adipose
18	chr13:51268600-51271600	Weak transcription	Brain Substantia Nigra	brain
19	chr13:51268600-51271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr13:51268600-51271800	Weak transcription	HMEC	breast
21	chr13:51268600-51272000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:51268600-51272000	Weak transcription	NH-A	brain
23	chr13:51268600-51272200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:51268600-51272200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:51268600-51272400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:51268600-51272400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr13:51268600-51272400	Weak transcription	Fetal Lung	lung
28	chr13:51268600-51272400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr13:51268600-51272400	Weak transcription	Osteobl	bone
30	chr13:51268600-51273600	Weak transcription	HSMM	muscle
31	chr13:51268600-51273800	Weak transcription	HSMMtube	muscle
32	chr13:51268600-51274200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:51268600-51274400	Weak transcription	NHDF-Ad	bronchial
34	chr13:51268800-51273800	Weak transcription	Fetal Intestine Large	intestine
35	chr13:51268800-51274600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:51269000-51272000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:51269000-51272000	Weak transcription	Fetal Intestine Small	intestine
38	chr13:51269200-51271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr13:51269200-51272200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:51269400-51296800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:51270200-51271000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
42	chr13:51270400-51271200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr13:51270400-51271400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:51270600-51272800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:51270600-51272800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr13:51270600-51272800	Enhancers	Fetal Muscle Leg	muscle
47	chr13:51270600-51272800	Enhancers	Left Ventricle	heart
48	chr13:51270600-51272800	Enhancers	Psoas Muscle	Psoas
49	chr13:51270600-51276200	Enhancers	Fetal Heart	heart
50	chr13:51270800-51275000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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